Constant Field Values

Contents

org.jmol.*

  • org.jmol.adapter.readers.more.ForceFieldReader
    Modifier and Type
    Constant Field
    Value
    private static final String
    " CA CB CC CD CE CF CG CH CI CJ CK CM CN CP CQ CR CT CV CW HA HP HC HO HS HW LP NA NB NC NT OH OS OW SH AH BH HT HY AC BC CS OA OB OE OT dw hc hi hn ho hp hs hw hscp htip ca cg ci cn co coh cp cr cs ct c3h c3m c4h c4m na nb nh nho nh+ ni nn np npc nr nt nz oc oe oh op oscp otip sc sh sp br cl ca+ ar si lp nu sz oz az pz ga ge tioc titd li+ na+ rb+ cs+ mg2+ ca2+ ba2+ cu2+ cl- br- so4 sy oy ay ayt nac+ mg2c fe2c mn4c mn3c co2c ni2c lic+ pd2+ ti4c sr2c ca2c cly- hocl py vy nh4+ so4y lioh naoh koh foh cloh beoh al CE1 CF1 CF2 CF3 CG CD2 CH1E CH2E CH3E CM CP3 CPH1 CPH2 CQ66 CR55 CR56 CR66 CS66 CT CT3 CT4 CUA1 CUA2 CUA3 CUY1 CUY2 HA HC HMU HO HT LP NC NC2 NO2 NP NR1 NR2 NR3 NR55 NR56 NR66 NT NX OA OAC OC OE OH2 OK OM OS OSH OSI OT OW PO3 PO4 PT PUA1 PUY1 SE SH1E SK SO1 SO2 SO3 SO4 ST ST2 ST2 br br- br1 cl cl- cl1 cl12 cl13 cl14 cl1p ca+ cu+2 fe+2 mg+2 zn+2 cs+ li+ na+ rb+ al4z si si4 si4c si4z ar he kr ne xe dw hi hw ca cg ci co coh cp cr cs ct ct3 na nb nh nho ni no np nt nt2 nz oa oc oh op os ot sp bt cl\' si4l si5l si5t si6 si6o si\' br ca cc cd ce cf cl cp cq cu cv cx cy ha hc hn ho hp hs na nb nc nd nh oh os pb pc pd pe pf px py sh ss sx sy hn2 ho2 cz oo oz si sio hsi osi "
    private static final String
    " AH BH AC BC "
    private static final String
    " IM IP sz az sy ay ayt "
    private static final String
    " al al4z ar ba2+ beoh br br- br1 ca+ ca2+ ca2c cl cl\' cl- cl1 cl12 cl13 cl14 cl1p cloh cly- co2c cs+ cu+2 cu2+ fe+2 fe2c ga ge he kr li+ lic+ lioh lp LP mg+2 mg2+ mg2c mn3c mn4c na+ nac+ naoh ne ni2c nu pd2+ rb+ si si\' si4 si4c si4l si4z si5l si5t si6 si6o sio sr2c ti4c tioc titd xe zn+2 "
  • org.jmol.adapter.readers.pdb.PdbReader
    Modifier and Type
    Constant Field
    Value
    private static final float
    78.95683288574219f
    private static final String
    "ATOM HETATM MODEL CONECT HELIX SHEET TURN HET HETNAM ANISOU SITE CRYST1 SCALE1 SCALE2 SCALE3 EXPDTA FORMUL REMARK HEADER COMPND SOURCE TITLE SEQADV "
    private static final int
    1
    private static final int
    2
    private static final int
    0
    private static final float
    0.01745329238474369f
  • org.jmol.adapter.readers.quantum.CsfReader
    Modifier and Type
    Constant Field
    Value
    private static final byte
    0x2
    private static final byte
    0x6
    private static final byte
    0x1
    private static final byte
    0x3
    private static final byte
    0x5
    private static final byte
    0x8
    private static final byte
    0x3
    private static final byte
    0x1
    private static final byte
    0x3
    private static final byte
    0x4
    private static final byte
    0x9
    private static final byte
    0xff
    private static final byte
    0x2
    private static final byte
    0x1
    private static final byte
    0x1
    private static final byte
    0x3
    private static final byte
    0x2
    private static final byte
    0x4
    private static final byte
    0x5
    private static final byte
    0xa
    private static final byte
    0x7
    private static final byte
    0x1
    private static final byte
    0x2
    private static final byte
    0x4
  • org.jmol.adapter.readers.quantum.GaussianReader
    Modifier and Type
    Constant Field
    Value
    private static final int
    1
  • org.jmol.adapter.readers.quantum.JaguarReader
    Modifier and Type
    Constant Field
    Value
    private static final float
    1.7320507764816284f
  • org.jmol.adapter.readers.quantum.org.jmol.adapter.readers.quantum.MopacSlaterReader
    Modifier and Type
    Constant Field
    Value
    protected static final float
    9.999999747378752E-5f
    public static final String
    "AM1 MNDO PM3 PM6 PM7 RM1"
  • org.jmol.adapter.readers.quantum.MOReader
    Modifier and Type
    Constant Field
    Value
    private static final String
    "(D1) (D4) (D6) (D2) (D3) (D5)"
    private static final String
    "(D5) (D2) (D3) (D4) (D1)"
    private static final String
    "(F1) (F2) (F3) (F4) (F5) (F6) (F7)"
    protected final int
    2
    protected final int
    1
    protected final int
    3
    protected final int
    0
    private static final String
    "(PX) (PY) (PZ)"
  • org.jmol.adapter.readers.quantum.org.jmol.adapter.readers.quantum.SlaterReader
    Modifier and Type
    Constant Field
    Value
    private static final double
    0.07957747154594767
  • org.jmol.adapter.readers.simple.FAHReader
    Modifier and Type
    Constant Field
    Value
    static final String
    " -- FAH:: is required for Frame files but not the Top file.\n -- automatic calculation of structure using DSSP\n -- Both files are required; three load options:\n \n LOAD FILES \"ViewerTop.json\" + \"ViewerFrame22.json\" // explicit joining to two files\n \n LOAD ViewerTop.json; \n LOAD XYZ FAH::ViewerFrame22.json // first the atoms, then the coordinates\n \n LOAD FAH::ViewerFrame22.json // just the coordinates with associated ViewerTop.json assumed present\n \n -- Subsequent calls to LOAD XYZ will replace coordinates and recalculate DSSP only.\n\n LOAD ViewerTop.json; \n LOAD XYZ FAH::ViewerFrame0.json \n delay 1.0\n LOAD XYZ FAH::ViewerFrame22.json \n \n"
  • org.jmol.adapter.readers.xtal.CastepReader
    Modifier and Type
    Constant Field
    Value
    private static final float
    57.295780181884766f
    private static final double
    6.283185307179586
  • org.jmol.adapter.readers.xtal.CgdReader
    Modifier and Type
    Constant Field
    Value
    private static final String
    ";P2=P121;P21=P1211;C2=C121;A2=A121;I2=I121;Pm=P1m1;Pc=P1c1;Pn=P1n1;Pa=P1a1;Cm=C1m1;Am=A1m1;Im=I1m1;Cc=C1c1;An=A1n1;Ia=I1a1;Aa=A1a1;Cn=C1n1;Ic=I1c1;P2/m=P12/m1;P21/m=P121/m1;C2/m=C12/m1;A2/m=A12/m1;I2/m=I12/m1;P2/c=P12/c1;P2/n=P12/n1;P2/a=P12/a1;P21/c=P121/c1;P21/n=P121/n1;P21/a=P121/a1;C2/c=C12/c1;A2/n=A12/n1;I2/a=I12/a1;A2/a=A12/a1;C2/n=C12/n1;I2/c=I12/c1;Pm3=Pm-3;Pn3=Pn-3;Fm3=Fm-3;Fd3=Fd-3;Im3=Im-3;Pa3=Pa-3;Ia3=Ia-3;Pm3m=Pm-3m;Pn3n=Pn-3n;Pm3n=Pm-3n;Pn3m=Pn-3m;Fm3m=Fm-3m;Fm3c=Fm-3c;Fd3m=Fd-3m;Fd3c=Fd-3c;Im3m=Im-3m;Ia3d=Ia-3d;"
  • org.jmol.adapter.readers.xtal.CrystalReader
    Modifier and Type
    Constant Field
    Value
    private static final int
    6
    private static final int
    1
    private static final int
    2
    private static final int
    0
    private static final int
    5
    private static final int
    4
    private static final int
    3
  • org.jmol.adapter.readers.xtal.JanaReader
    Modifier and Type
    Constant Field
    Value
    static final int
    5
    static final int
    35
    static final int
    20
    static final int
    10
    static final int
    15
    static final String
    "tit cell ndim qi lat sym spg end wma"
    static final int
    30
    static final int
    25
    static final int
    0
    public static final String
    "U11U22U33U12U13U23UISO"
    static final int
    40
  • org.jmol.adapter.readers.xtal.MagresReader
    Modifier and Type
    Constant Field
    Value
    private static final int
    1
    private static final int
    0
    private static final int
    2
    private static final int
    -2
    private static final int
    -1
  • org.jmol.adapter.readers.xtal.ShelxReader
    Modifier and Type
    Constant Field
    Value
    private static final String
    ";ZERR;DISP;UNIT;LAUE;REM;MORE;TIME;HKLF;OMIT;SHEL;BASF;TWIN;EXTI;SWAT;HOPE;MERG;SPEC;RESI;MOVE;ANIS;AFIX;HFIX;FRAG;FEND;EXYZ;EXTI;EADP;EQIV;CONN;PART;BIND;FREE;DFIX;DANG;BUMP;SAME;SADI;CHIV;FLAT;DELU;SIMU;DEFS;ISOR;NCSY;SUMP;L.S.;CGLS;BLOC;DAMP;STIR;WGHT;FVAR;BOND;CONF;MPLA;RTAB;HTAB;LIST;ACTA;SIZE;TEMP;WPDB;FMAP;GRID;PLAN;MOLE;"
  • org.jmol.adapter.readers.xtal.SiestaReader
    Modifier and Type
    Constant Field
    Value
    private static final double
    1.0
    private static final double
    0.529177
    private static final double
    1.0E10
    private static final double
    10.0
    private final int
    1
    private final int
    2
    private final int
    0
  • org.jmol.adapter.readers.xtal.Wien2kReader
    Modifier and Type
    Constant Field
    Value
    private final String
    " x y z"
  • org.jmol.dssx.DSSR1
    Modifier and Type
    Constant Field
    Value
    private static final String
    "..bulges.nts_long..coaxstacks.stems.pairs.nt*..hairpins.nts_long..hbonds.atom1_id;atom2_id..helices.pairs.nt*..iloops.nts_long..isocanonpairs.nt*..junctions.nts_long..kissingloops.hairpins.nts_long..multiplets.nts_long..nonstack.nts_long..nts.nt_id..pairs.nt*..sssegments.nts_long..stacks.nts_long..stems.pairs.nt*.."
  • org.jmol.export.___Exporter
    Modifier and Type
    Constant Field
    Value
    protected static final float
    57.295780181884766f
  • org.jmol.export._ObjExporter
    Modifier and Type
    Constant Field
    Value
    private static final boolean
    false
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.Calculations
    Modifier and Type
    Constant Field
    Value
    static final int
    1
    static final int
    0
    static final int
    6
    static final int
    7
    static final int
    4
    static final int
    3
    static final int
    2
    static final int
    5
    public static final double
    0.017453292519943295
    static final double
    4.1868
    private static final double
    1.5707963267948966
    public static final double
    57.29577951308232
    private static final double
    6.283185307179586
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsMMFF
    Modifier and Type
    Constant Field
    Value
    public static final int
    68
    public static final int
    133
    static final double
    143.9325
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.CalculationsUFF
    Modifier and Type
    Constant Field
    Value
    static final double
    92.1096
    static final double
    1390.2842991599998
    static final double
    184.2192
    static final double
    25.1208
    static final double
    2696.8016159999997
    static final int
    3
    static final int
    9
    static final int
    0
    static final int
    10
    static final int
    1
    static final int
    7
    static final int
    6
    static final int
    2
    static final int
    8
    static final int
    5
    static final int
    4
  • org.jmol.minimize.forcefield.ForceField
    Modifier and Type
    Constant Field
    Value
    public static final int
    3
    public static final int
    4
    static final int
    4
    static final int
    2
    static final int
    128
    static final int
    1
    static final int
    32
    static final int
    8
    static final int
    16
    static final int
    64
    public static final int
    0
    public static final int
    1
    public static final int
    2
    public static final int
    3
    public static final int
    4
    public static final int
    5
    public static final int
    6
  • org.jmol.minimize.forcefield.ForceFieldMMFF
    Modifier and Type
    Constant Field
    Value
    private static final int
    123
    private static final int
    124
    private static final int
    125
    private static final int
    126
    private static final int
    122
    private static final int
    0
    private static final int
    6
    private static final int
    0
    private static final int
    0
    private static final int
    0
    private static final String
    "END.BCI.CHG.ANG.NDK.OND.OOP.TBN.FSB.TOR.VDW."
    private static final int
    5
    private static final int
    546
    private static final int
    3
    private static final int
    34
    private static final int
    13
    private static final int
    1
    private static final int
    21
    private static final int
    37
    private static final int
    9
    private static final int
    17
  • org.jmol.minimize.forcefield.ForceFieldUFF
    Modifier and Type
    Constant Field
    Value
    private static final int
    5
    private static final int
    6
    private static final int
    2
    private static final int
    3
    private static final int
    6
    private static final int
    1
    private static final int
    2
    private static final int
    0
    private static final int
    4
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFAngleCalc
    Modifier and Type
    Constant Field
    Value
    static final double
    -0.006981317007977318
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFDistanceCalc
    Modifier and Type
    Constant Field
    Value
    static final double
    -2.0
    static final double
    2.3333333333333335
    static final double
    71.96625
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFESCalc
    Modifier and Type
    Constant Field
    Value
    private static final double
    0.05
  • org.jmol.minimize.forcefield.org.jmol.minimize.forcefield.MMFFOOPCalc
    Modifier and Type
    Constant Field
    Value
    static final double
    71.96568080495746
    static final double
    2.5120761569715815
  • org.jmol.modelsetbio.AminoMonomer
    Modifier and Type
    Constant Field
    Value
    private static final float
    0.296705961227417f
    private static final byte
    0x3
    private static final byte
    0x0
    private static final byte
    0x2
    private static final byte
    0x1
    private static final byte
    0x4
  • org.jmol.modelsetbio.AminoPolymer
    Modifier and Type
    Constant Field
    Value
    private static final float
    9.0f
    private static final float
    81.0f
    private static final float
    0.25f
  • org.jmol.modelsetbio.BioExt
    Modifier and Type
    Constant Field
    Value
    private static final String
    "LYSN"
    private static final String
    "ARGN;ASNN;ASNO;ASPO;GLNN;GLNO;GLUO;HISN;HISC;PHECTRPC;TRPN;TYRC"
    private static final String
    "ARGNE;ARGNH1;ASNNH2;GLNNE2;TRPNE1;HISNE2"
    private static final String
    "A3;A1;C3;G3;I3"
  • org.jmol.modelsetbio.BioModelSet
    Modifier and Type
    Constant Field
    Value
    private static final int
    2
  • org.jmol.modelsetbio.BioPolymer
    Modifier and Type
    Constant Field
    Value
    protected static final int
    1
    protected static final int
    3
    protected static final int
    0
    protected static final int
    2
  • org.jmol.modelsetbio.BioResolver
    Modifier and Type
    Constant Field
    Value
    private static final String
    ",[AHR],[ALL],[AMU],[ARA],[ARB],[BDF],[BDR],[BGC],[BMA],[FCA],[FCB],[FRU],[FUC],[FUL],[GAL],[GLA],[GLC],[GXL],[GUP],[LXC],[MAN],[RAM],[RIB],[RIP],[XYP],[XYS],[CBI],[CT3],[CTR],[CTT],[LAT],[MAB],[MAL],[MLR],[MTT],[SUC],[TRE],[GCU],[MTL],[NAG],[NDG],[RHA],[SOR],[SOL],[SOE],[XYL],[A2G],[LBT],[NGA],[SIA],[SLB],[AFL],[AGC],[GLB],[NAN],[RAA]"
  • org.jmol.modelsetbio.NucleicMonomer
    Modifier and Type
    Constant Field
    Value
    private static final byte
    0x19
    private static final byte
    0x5
    private static final byte
    0x1a
    private static final byte
    0x16
    private static final byte
    0x7
    private static final byte
    0x1b
    private static final byte
    0x3
    private static final byte
    0x1d
    static final byte
    0x1
    private static final byte
    0xa
    private static final byte
    0x14
    private static final byte
    0x12
    private static final byte
    0x4
    private static final byte
    0x11
    private static final byte
    0x6
    private static final byte
    0xe
    private static final byte
    0x10
    private static final byte
    0x9
    private static final byte
    0xb
    private static final byte
    0xf
    private static final byte
    0x17
    private static final byte
    0x8
    private static final byte
    0x18
    private static final byte
    0x2
    private static final byte
    0x15
    private static final byte
    0xc
    private static final byte
    0x1c
    private static final byte
    0x13
    private static final byte
    0xd
  • org.jmol.modelsetbio.PhosphorusMonomer
    Modifier and Type
    Constant Field
    Value
    protected static final byte
    0x0
  • org.jmol.quantum.mo.DataAdder7F
    Modifier and Type
    Constant Field
    Value
    static final double
    0.6708203932499369
    static final double
    0.27386127875258304
    static final double
    0.6123724356957945
    static final double
    1.0954451150103321
    static final double
    0.6123724356957945
    static final double
    0.27386127875258304
    static final double
    1.0954451150103321
    static final double
    0.8660254037844386
    static final double
    1.0606601717798214
    static final double
    0.7905694150420949
    static final double
    0.7905694150420949
    static final double
    1.0606601717798214
  • org.jmol.render.org.jmol.render.TextRenderer
    Modifier and Type
    Constant Field
    Value
    static final int
    4
  • org.jmol.shapecgo.CGOMesh
    Modifier and Type
    Constant Field
    Value
    public static final int
    25
    public static final int
    17
    public static final int
    2
    public static final int
    23
    public static final int
    6
    public static final int
    27
    public static final int
    15
    public static final int
    9
    public static final int
    13
    public static final int
    16
    public static final int
    18
    public static final int
    12
    public static final int
    3
    public static final int
    19
    public static final int
    22
    public static final int
    20
    public static final int
    21
    public static final int
    2
    public static final int
    3
    public static final int
    1
    public static final int
    0
    public static final int
    6
    public static final int
    5
    public static final int
    4
    public static final int
    24
    public static final int
    -100
    public static final int
    -103
    public static final int
    -101
    public static final int
    -102
    private static final String
    "BEGIN:2 END:3 STOP:0 POINT:0 POINTS:0 LINES:1 LINE_LOOP:2 LINE_STRIP:3 TRIANGLES:4 TRIANGLE_STRIP:5 TRIANGLE_FAN:6 LINE:1 VERTEX:4 NORMAL:5 COLOR:6 LINEWIDTH:10 SAUSAGE:14 DIAMETER:-100 SCREEN:-101 UVMAP:-102 PS:-103 NEWPATH:-104 CLOSEPATH:-105 STROKE:-106 SETLINEWIDTH:-107 SCALE:-108 MOVETO:-109 LINETO:-110 SHOWPAGE:-111"
    public static final int
    10
    public static final int
    5
    public static final int
    29
    public static final int
    -105
    public static final int
    -110
    public static final int
    -109
    public static final int
    -104
    public static final int
    -108
    public static final int
    -107
    public static final int
    -111
    public static final int
    -106
    public static final int
    26
    public static final int
    28
    public static final int
    14
    public static final int
    1
    public static final int
    7
    public static final int
    0
    public static final int
    8
    public static final int
    4
    public static final int
    11
  • org.jmol.thread.JmolThread
    Modifier and Type
    Constant Field
    Value
    protected static final int
    1
    protected static final int
    2
    protected static final int
    3
    protected static final int
    -2
    protected static final int
    -1
    protected static final int
    0
  • org.jmol.viewer.binding.Binding
    Modifier and Type
    Constant Field
    Value
    public static final int
    8
    public static final int
    28
    public static final int
    63
    public static final int
    32768
    public static final int
    768
    public static final int
    2
    public static final int
    10
    public static final int
    3
    public static final int
    512
    public static final int
    4096
    public static final int
    8192
    public static final int
    16
    public static final int
    20
    public static final int
    8
    public static final int
    61440
    public static final int
    4
    public static final int
    1
    public static final int
    256
    public static final int
    16384
    public static final int
    32

org.openscience.*

  • org.openscience.jmol.app.jmolpanel.console.AppConsole
    Modifier and Type
    Constant Field
    Value
    public static final String
    "Editor Variables Clear History State UndoRedo Close Font Help"
    static final int
    1
    static final int
    0
    static final int
    2
  • org.openscience.jmol.app.jsonkiosk.JsonNioClient
    Modifier and Type
    Constant Field
    Value
    public static final String
    "reply.....quit......command...move......rotate....translate.zoom......sync......touch....."
  • org.openscience.jmol.app.jsonkiosk.JsonNioClient.TouchHandler
    Modifier and Type
    Constant Field
    Value
    public static final int
    2
    public static final float
    100.0f
    public static final float
    3000.0f
    public static final float
    30.0f
  • org.openscience.jmol.app.jsonkiosk.JsonNioServer
    Modifier and Type
    Constant Field
    Value
    public static final int
    1
    public static final int
    2
  • org.openscience.jmol.app.jsonkiosk.JsonNioService
    Modifier and Type
    Constant Field
    Value
    private final String
    "out.......in........quit......"
    public static final int
    1
  • org.openscience.jmol.app.webexport.Test
    Modifier and Type
    Constant Field
    Value
    private static final long
    1L
  • org.openscience.jmol.app.webexport.WebExport
    Modifier and Type
    Constant Field
    Value
    static final String
    "http://chemapps.stolaf.edu/jmol/jsmol"
    private static final int
    1
    private static final int
    0
  • org.openscience.jvxl.Jvxl
    Modifier and Type
    Constant Field
    Value
    private static final String
    "JVXL.java Version 1.0"